EZ2 DNA Investigator Sep&Prep Kit

Automated processing of sexual assault samples using the EZ2 Connect Fx instrument

S_1456_7_MTO_HID_EZ2_DNA_Investigator_SepandPrep_Kit
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Get in touch with our team today and request a quote to trial the EZ2 DNA Investigator Sep&Prep Kit (48).

EZ2 DNA Investigator Sep&Prep Kit (48)

Cat no. / ID.   952134

For 48 preps on the EZ2 Connect Fx: Reagent Cartridges (Investigator Sep&Prep), Disposable Filter-Tips and Tip-Holders, Tubes, QIAshredder, Reagent UI, Lysis Buffer, Elution Buffer, Proteinase K and Nuclease-free Water
EZ2 DNA Investigator Sep&Prep Kit is intended for molecular biology applications in forensic, human identity and paternity testing. The product is not intended for diagnosis, prevention or treatment of a disease.
Want to try this solution for the first time?
Get in touch with our team today and request a quote to trial the EZ2 DNA Investigator Sep&Prep Kit (48).

Features

  • Differential extraction of 1–24 sexual assault samples on the EZ2 Connect Fx instrument
  • Effective separation between sperm-derived DNA and DNA coming from non-sperm cells
  • High DNA recovery from sperm cells even from challenging samples
  • Direct use of sperm fractions without further need for purification
  • Reduced hands-on time and high ease-of-use compared to traditional manual methods

Product Details

Sexual assault samples are commonly comprised of a mixture of non-sperm and sperm cells from multiple individuals. EZ2 DNA Investigator Sep&Prep Kit is based on the principle of differential extraction, which uses the different properties of sperm cells and all other cells that occur in sexual assault samples. This enables the generation of individual profiles of the perpetrator from whom the sperm cells originated. EZ2 DNA Investigator Sep&Prep Kit contains all required reagents and labware to separate the non-sperm fraction from the sperm fraction and automate the purification of genomic sperm-derived DNA on the EZ2 Connect Fx instrument. Magnetic-particle technology provides high-quality DNA from the sperm fraction that is suitable for direct use in downstream applications. EZ2 Connect Fx performs all steps of the sample separation and preparation procedure of up to 24 samples in a single run of ca. 70 minutes. The automated workflow provides reduced hands-on time, high ease-of-use, increased throughput and highly reproducible results in a short run time in order to meet the increased demand for the timely analysis of sexual assault evidence kits and the processing of backlogs.

For purification of the non-sperm fractions (NSF), we recommend the use of EZ1&2 DNA Investigator Kit which can either be done directly afterwards on the same EZ2 Connect Fx instrument or at a later timepoint.

EZ2 DNA Investigator Sep&Prep Kit meets ISO 18385 requirements.

 

Performance

EZ2 DNA Investigator Sep&Prep Kit is characterized by improved sperm DNA recovery and precise separation between sperm-derived DNA and DNA coming from non-sperm cells (see figure “ Ratio of human: male DNA in the sperm fractions” and figure “ Precise separation even with challenging samples”). It is highly effective in handling challenging samples with high female DNA and low male DNA amounts and is capable of producing single-person profiles or mixed profiles with a distinct male major component which often result in mixed STR profiles using other methods (see figure “ Distinct profiles from mixed samples”).

Principle

EZ2 Connect Fx provides fully automated separation of the non-sperm fraction from the sperm fraction and preparation of sperm-derived genomic DNA using silica-coated magnetic particles. Magnetic-particle technology eliminates tedious centrifugation steps, and the easy-to-use instrument allows purification of 1–24 samples in a single run. The automatic sensor-controlled lock of the instrument door and the use of sealed reagent cartridges reduce the risk of environmental contamination. Furthermore, the simplified and streamlined workflow further reduces the risk of processing errors and user-to-user variability, which may happen with manual differential extraction according to Gill et., 1975 (1). 

(1): Gill P, Jeffreys AJ, Werrett DJ (1985) Forensic application of DNA fingerprints. Nature 318:577–579

Features of EZ2 DNA Investigator Sep&Prep Kit

Feature Details
Reactions per kit 48
Sample type Sexual assault samples, e.g., post-coital swabs, vaginal or buccal swabs with semen, sperms mixed with different cell types, ejaculate on fabrics, etc.
Processing Automated
Compatibility EZ2 Connect Fx
Technology Magnetic particles
Sample volume 500 µL
Elution volumes 50 µL, 100 µL
Time per instrument run ca. 70 min incl. removal of NSF*, wash steps, DNA preparation, ProtK inactivation
Total time PCR-ready extracts from sperm fraction in around 2.5 hours
Output Ready-to-use sperm-derived DNA, non-sperm fraction
Downstream analysis qPCR, dPCR, STR, NGS

*NSF = Non-sperm fraction. 

The non-sperm fraction can be stored or purified with EZ1&2 DNA Investigator Kit (48) on the same instrument.

Procedure

Mixed sexual assault samples consisting of non-sperm and sperm cells are pre-treated (first lysis), centrifuged and loaded onto the EZ2 Connect Fx instrument. After removal of the supernatant (non-sperm fraction, NSF), EZ2 Connect Fx performs a number of purification steps. Sperm-derived genomic DNA is eluted and collected in the Elution Tube in rack position D. It is ready to use for any downstream application (qPCR, STR, NGS). The non-sperm fractions is available in the Sample Tube in rack position A. These can either be immediately purified by using EZ1&2 DNA Investigator Kit on the same instrument (without changing the rack position) or removed and stored for purification at a later time point (see " Workflow overview”). Optional protocols for spermatozoa staining and/or chromatographic immunoassay (e.g., PSA) can be combined with the Sep&Prep workflow.

 

Applications

The high-quality DNA obtained from the sperm fraction of sexual assault samples processed with the EZ2 DNA Investigator Sep&Prep Kit is ideally suited for:

  • DNA quantification (qPCR, dPCR)
  • CE- or NGS-based STR and SNP genotyping

Supporting data and figures

Resources

Brochures & Guides (2)
Automated processing of sexual assault samples using EZ2 Connect Fx

Human identification and forensics: Advanced workflow solutions


Kit Handbooks (1)
Quick-Start Protocols (1)
Instrument User Manuals (1)
For use with EZ2 DNA Investigator Sep&Prep Kit
Safety Data Sheets (1)
Certificates of Analysis (1)

FAQ

What are EZ2 DNA Investigator Sep&Prep storage conditions
The kit should be stored at room temperature (15–25°C). Elution Buffer has to be stored at 4–8°C upon arrival. The Reagent UI has to be stored protected from light.
FAQ-4134
What is Reagent UI?
It is a reducing agent needed for sperm cell lyses. The 1:100 dilution specified in the protocol is stable for 5 days at room temperature, protected from light.
FAQ-4135
I haven’t stored Reagent UI protected from light. Can I buy Reagent UI separately as a replacement?
Yes, it can be purchased from QIAGEN. The catalog number is 77900.
FAQ-4136
Which protocol package needs to be installed on EZ2 Connect Fx to run the Sep&Prep protocol?
Software Version 1.2.1 (or newer) has to be installed. It is integrated into SW patch 12.
FAQ-4137
If an older software is installed, can the Sep&Prep protocol be uploaded as a standalone protocol and be functional?
No, it is not possible and would have to be requested as a custom protocol.
FAQ-4138
What is the sample input?
The sample input is 500 µL sample lysate.
FAQ-4139
What is the sample output?
Ready to use sperm fraction (50 µL or 100 µL); non-sperm fraction (450 µL)
FAQ-4140
Is it possible to select an elution volume other than 50 µL or 100 µL specified in the protocol?
No, it is not possible and would have to be requested as a custom protocol.
FAQ-4141
How long does the differential lysis incubation take?
The sample must be incubated for a minimum of 1 hour. Incubation of up to 2 hours delivers identical results. Incubation up to 19 hours is possible but may lead to DNA yield loss.
FAQ-4142
Can an instrument load check be done?
Yes, a load check is possible, but the position of D-Tube from well 11 is not included.
FAQ-4143
How should I store the sperm fraction?
The sperm fraction can be stored at 2–8°C for up to 2 years, or at −30°C to −15°C for storage periods longer than 2 years.
FAQ-4144
How should I store the non-sperm fraction?
The non-sperm fraction can be stored at 4–8°C for 4 weeks, or at −20°C for 6 months. After purification, it can be stored according to the manufacturer's recommended storage conditions.
FAQ-4145
How should I purify the non-sperm fraction?
We recommend the Large Volume Protocol of EZ1&2 DNA Investigator Kit (cat. no. 952034) for purification of the non-sperm fraction on EZ2 Connect Fx. However, any other DNA purification method can be used.
FAQ-4146
Which Sep&Prep workflow steps are automated on EZ2 Connect Fx?
After the off-deck epithelial lysis and centrifugation, the instrument does the following automated steps: removal of non-sperm fraction from the sperm pellet, a series of sperm (pellet) washes, sperm pellet lysis, Prot K inactivation resulting in elution of ready to use sperm fraction, and a non-sperm fraction ready for purification.
FAQ-4147
Do I have to wait for EZ2 Connect Fx to cool down before starting a new run?
No, one doesn’t have to wait for the cooldown of the device for a re-run with Sep&Prep. When starting a run to process non-sperm or any other samples with the EZ1&2 DNA Investigator Kit shortly after an Investigator Sep&Prep run, the heating block of the instrument is still at high temperature. This may cause increased evaporation of elution buffer, which is transferred to the heating position after a protocol is started, resulting in slightly lower eluate volumes. If this is observed, wait until the heating block has cooled to a lower temperature. Note that the elution buffer is heated to 65°C during a run. Thus, cooling to lower temperatures is not required.
FAQ-4148
EZ2 Connect Fx instrument crashed mid-run. How do I recover my samples?
Please refer to EZ2 Connect Fx DNA Investigator Sep&Prep Recovery Protocol User Manual (www.qiagen.com/HB-3743).
FAQ-4149
EZ2 Connect Fx instrument crashed mid-run. How do I recover my samples?
No, because the lysis buffer will leak during lysis. This will result in reduced performance and yield.
FAQ-4150
EZ2 Connect Fx instrument crashed mid-run. How do I recover my samples?
No, because the lysis buffer will leak during lysis. This will result in reduced performance and yield.
FAQ-4151
Can I skip the QIAshredder step?
No, because the lysis buffer will leak during lysis. This will result in reduced performance and yield.
FAQ-4152