Reorder now!
Reorder from your past orders in just one click.
Order by Quote
Add quote number from your quote document
Add customer number from your quote document
Order by Catalog Number
Use mass upload
Looking for a quick way to design experiments?
Try the Workflow Configurator. A convenient tool to build experimental workflows and find products to match your needs.

QIAcube Connect

For fully automated, spin-column-based nucleic acid extraction that you can manage from outside the lab using QIAsphere


  • Automates over 80 QIAGEN kits with over 140 standard protocols for DNA, RNA and protein sample processing
  • Optional protocol customization expands the use to over 3000 protocols
  • Get reproducible results with less hands-on time
  • QIAsphere-ready: monitor runs remotely, for quick response times, through the QIAsphere App

✓ 24/7 automatic processing of online orders

✓ Knowledgeable and professional Product & Technical Support

✓ Fast and reliable (re)-ordering

QIAcube Connect

Cat. No. / ID: 9002864

Instrument, 1-year warranty on parts and labor
QIAcube Connect is designed to perform fully automated purification of nucleic acids and proteins in molecular biology applications. The system is intended for use by professional users trained in molecular biological techniques and the operation of QIAcube Connect.

✓ 24/7 automatic processing of online orders

✓ Knowledgeable and professional Product & Technical Support

✓ Fast and reliable (re)-ordering

Product Details

QIAcube Connect is redefining the benefits of automated sample processing. Go beyond fully automating your QIAGEN spin-column extraction and purification protocols at the push of a button. QIAcube Connect also lets you monitor and manage your instrument remotely, from your mobile device or desktop computer, by using the QIAsphere App.

Explore the demo tool to learn more about QIAcube Connect.

QIAcube Connect operates in conjunction with QIAcube Connect Accessories.

To find resources for the QIAcube, visit the QIAcube (classic) resource page.


The plug-and-play QIAcube Connect simplifies purification by automating QIAGEN spin-column kits. No change of chemistry is needed, so startup is fast, results are immediate, and performance is comparable to the manual procedure.  


QIAcube Connect includes a centrifuge, heated shaker, pipetting system and robotic gripper (see "The QIAcube Connect worktable"). These let the QIAcube Connect fully automate more than 80 QIAGEN spin column kits. 

UV light decontamination

QIAcube Connect decontaminates your full worktable with built-in UV light (see ''The QIAcube Connect principle'') to prevent carryover between samples (see "Genomic DNA (gDNA) barely detectable after UV light exposure").

Remote connectivity with QIAsphere

QIAcube Connect is QIAsphere-ready. QIAsphere gives full connectivity so you can step out of the lab to ponder on your research while keeping an eye on your instrument run status.

Stay alert to important instrument events with QIAsphere's push notifications. You can even prepare the next run on the go, check maintenance status and manage run reports from anywhere, at anytime. Increase the efficiency and productivity of your lab. Learn more about QIAsphere.

Barcode scanner

Track samples and sample prep kit information throughout the process, using the handheld barcode scanner that comes with the kit.

Illuminated worktable

Light inside the instrument makes it easier for you to load your samples and perform your experiments.

Protocols for various sample types

QIAcube Connect has a variety of pre-installed protocols for purification of RNA, genomic DNA, plasmid DNA, viral nucleic acids and proteins, plus DNA and RNA cleanup. All standard protocols in the expanding range can also be downloaded free of charge. Customized protocols can also be requested.


QIAcube Connect isolates highly pure nucleic acids or proteins using a spin-column-based lyse, bind, wash and elute procedure (see ''Automated QIAprep Mini Standard procedure'').

Unparalleled ease-of-use

A large touchscreen (see figure ''The QIAcube Connect touchscreen'') simplifies protocol selection. Clear on-screen messages guide you through worktable setup. You are unlikely to make mistakes because the labware and accessories fit onto the worktable only in the correct orientation. In addition, a fully automated load check helps to ensure that samples, reagents and labware are loaded correctly.

Dedicated kits for DNA and RNA preps

Dedicated QIAcube Connect kits further simplify automated spin-preps for purification of RNA, genomic DNA and viral RNA. Rotor-adapters that come with the kits are pre-loaded with spin columns and elution tubes, so they are ready to use right out of the box. And then, to lessen the risk of errors even more, tubes required for the manual procedure are not included in kits dedicated for use with QIAcube Connect.


QIAcube Connect is highly suitable for academic research laboratories as well as pharmaceutical, biotechnology, and biomedical research laboratories performing applications, such as:

  • Sequencing/sequencing analysis
  • Gene expression analysis
  • Genotyping
  • Proteomics 
  • Microbiome research


Have your throughput demands increased? Do you want to expand your application range or further streamline workflows? Do you need to manage more complex samples? Do you need improved connectivity?

If the answer to any of these questions is yes, then QIAGEN’s trade-in/trade-up program is just right for you!

QIAGEN makes it easy to keep up to speed with the latest automation and sample processing technologies. Simply exchange an old instrument for a new one. Improve your efficiency by trading in a competitor instrument or trading up with an older QIAGEN instrument.

Learn more about trade-in/trade-up opportunities.

Supporting data and figures


Technical dataPower: 100–240 V AC, 50/60 Hz, 650 VA Mains supply voltage fluctuations are not to exceed 10% of nominal supply voltages. Note: The apparent power can exceed 650 VA for up to 2 seconds during the centrifuge acceleration and can reach an approximate value of 1000 VA.; Fuse: 2x T6.3A L 250V; Overvoltage category: II
Operating temperature18 to 28ºC (64.4 to 82.4ºF)
Relative humidity15–75% (non-condensing)
Place of operationFor indoor use only
Pollution level2
Environmental class3K2 (IEC 60721-3-3)
Transportation conditions–25°C to 60°C (–13°F to 140°F) in manufacturer's package; Max. 75% relative humidity (non-condensing); Environmenal class: 2K2 (IEC 60721-3-2)
Storage conditionsTemperature: 15ºC to 30ºC (59ºF to 86ºF) in manufacturer’s package; Relative humidity: Max. 75% (non-condensing); Environmental class: 1K2 (IEC 60721-3-1)
Instrument dimensionsDimensions (hood closed): width 65 cm (25.6 in.), height 58 cm (22.8 in.), depth 62 cm (24.4 in.); Dimensions (hood open): width 65 cm (25.6 in.), height 86 cm (34 in.), depth 62 cm (24.4 in.); Mass: QIAcube Connect: 71.5 kg (157.6 lb.), Accessories: 3 kg (6.6 lb.)
Centrifuge10,640 rpm maximum, 12,000 x g maximum, swing-out rotor maximum 45°, 12 rotor positions
ShakerSpeed 100–2000 rpm, amplitude 2 mm, heating range of ambient temperature to 70°C (158°F), ramp-up time of <5 minutes from ambient temperature to 55°C (±3°C). Difference in the temperature detected by the internal sensor and the temperature of the sample liquid is approximately –2°C.
Pipetting systemSyringe size 1 ml, pipetting range 5–900 µl
Table capacityUp to 12 samples per run
Touchscreen10.4” TFT Touchscreen, active area 211.2 x 158.4 mm, resolution 800*600 SVGA
Data outputUSB stick: USB2.0; Compatible OS: Windows 8, Windows 7, Windows Vista, Windows XP (SP3 or later); Mac OS x 10,1 or later; Operating temperature range: 0ºC to 35ºC; Operating humidity range: 10 to 90% (with no condensation); Storage temperature range: –20ºC to 60ºC (–4ºF to 140ºF); Storage humidity range: 10 to 90% (with no condensation); Formatting: FAT32
UV lampWavelength: 278nm; Optical power: 200-300mW
Special featureHandheld scanner; Scan pattern: Area Image (838 x 640-pixel array); Motion tolerance: Up to 610 cm/s (240 in/s) for 13 mil UPC at optimal focus; Symbol contrast: 20% minimum reflectance difference; Decode capability: Reads standard 1D, PDF, 2D, Postal and OCR symbology
SoftwareQIAGEN protocols are pre-installed on the QIAcube Connect.
AltitudeUp to 2000 m (6500 ft)

Service Plans

QIAcube Connect System FUL-3

Cat. No. / ID: 9002870

Instrument and service agreement package: robotic workstation for automated purification of DNA, RNA or proteins using QIAGEN spin column kits; includes installation, application training, Full Agreement for three years with a two business day response time and three inspection service visits.
QIAcube Connect System PRV-1

Cat. No. / ID: 9002871

Instrument and service agreement package: robotic workstation for automated purification of DNA, RNA or proteins using QIAGEN spin column kits; includes installation, application training and one preventive maintenance visit. One-year warranty on labor, travel and parts also included.
QIAcube Connect System FUL-2

Cat. No. / ID: 9002873

Instrument and service agreement package: robotic workstation for automated purification of DNA, RNA or proteins using QIAGEN spin column kits; includes installation, application training, Full Agreement for two years with a two business day response time and two inspection service visits.
QIAcube Connect, Premium Agreement

Cat. No. / ID: 9245209

On-site QIAcube Connect instrument repair, including travel, labor and parts, for a period of 1 year. Response time of next business day. Includes 1 Preventive Maintenance or Inspection Service during the Premium Agreement period.
QIAcube Connect, Core Agreement

Cat. No. / ID: 9245260

For the QIAcube Connect, one on-site repair service and one on-site Preventive Maintenance or Inspection Service, including travel, labor and spare parts for a period of one year. Response time of five business days. Includes a 10% discount on additional repair service during the Core Agreement period.
QIAcube Connect, Preventive Subscription

Cat. No. / ID: 9245210

One on-site Preventive Maintenance or Inspection Service visit for the QIAcube Connect, including travel, labor and parts. Includes a 10% discount on repair services during the Preventive Subscription period.
QIAcube Connect, Full Agreement

Cat. No. / ID: 9245208

On-site QIAcube Connect instrument repair, including travel, labor and parts, for a period of one year. Response time of two business days.


Instrument User Manuals (4)
User-Developed Protocols (1)
This protocol has been adapted to allow the user to replace the epithelial transfer and sperm pellet wash steps with an automated protocol using the QIAcube Connect.
Validation Reports (1)
Operating Software (1)
Instrument Technical Documents (1)
The QIAcube Connect System and 21 CFR Part 11 Regulations


What applications are offered on the QIAcube?

For an up-to-date list of available protocols, visit QIAcube Standard Protocols.


Click here for a virtual demonstration on how the QIAcube operates.

FAQ ID -1403
Can the QIAcube heater/shaker be used independently from protocol runs?

Yes. The heated shaker on the QIAcube can be operated independently if the QIAcube is not performing a protocol run. For instructions on how to operate the shaker, refer to the QIAcube User Manual, chapter 5 'Operating Procedures, section 5.7 'Operating the shaker'.

The shaker can be used to heat and shake samples simultaneously, shake samples without heating, or heat samples without shaking.


See: for a virtual demonstration of the heater and shaker on the QIAcube.

FAQ ID -1422
How can I load new protocols onto the QIAcube?

Visit the QIAcube Protocols page to search for protocols. The instructions for transferring a protocol to the QIAcube are listed below.

To transfer new protocols to the QIAcube, first save them to the supplied USB stick.

  1. Select the protocol to be downloaded and save it to the “New_Protocols” folder on the USB stick.
  2. Make sure that the QIAcube is switched on.
  3. To install the protocol, connect the USB stick to the QIAcube via the USB port, which is located at the front right of the instrument.
  4. In the main menu, press “Tools”.
  5. Select “Data Exchange” by pressing the "Up Symbol" or the "Down Symbol" to scroll through the list until it is highlighted and then press “Select”.
  6. To transfer protocols to the QIAcube, select “Protocols” and “Load from USB”.
  7. Start the download procedure by pressing “OK”. A message will confirm that the protocols have been successfully transferred to the QIAcube.

Note: Protocols already installed on the QIAcube that have the same name as downloaded protocols will be overwritten.

    8. When the protocols have been successfully transferred to the QIAcube, press “OK”.




FAQ ID -1421
Are run reports and/or log files available on the QIAcube?

Yes. At the end of each protocol run on the QIAcube, a report file is generated that contains important information such as number of samples, liquid volumes measured during the load check, and run time. A log file is also generated that contains information about instrument actions, such as movement of the robotic arm.


FAQ ID -1412
Can the QIAcube centrifuge be used independently from protocol runs?

Yes. The QIAcube centrifuge can be operated independently if the QIAcube is not performing a protocol run. For instructions on how to operate the centrifuge, refer to the QIAcube User Manual, chapter 5 'Operating Procedures, section 5.8 'Operating the Centrifuge'.



FAQ ID -1423
Is it necessary to place the lids of the elution tube and column into the slots of the rotor adapter during processing on the QIAcube?

Yes, this is absolutely necessary. If the lids are not securely fixed in the rotor adapter slots during processing on the QIAcube, they will become detached from the elution tubes and columns during centrifugation and will collect at the bottom of the centrifuge chamber.


FAQ ID -1415
Are there any specific cleaning solutions recommended for the QIAcube?

The following disinfectants and detergents are recommended for cleaning the QIAcube:

  • Mikrozid® Liquid (Schülke & Mayr GmbH) — ethanol-based disinfectant for spraying onto surfaces (consists of 25 g ethanol and 35 g 1-propanol per 100 g Mikrozid Liquid)
  • RBS®-35 Detergent Concentrate (Pierce Chemical Co.) — anionic and nonionic surfactant based detergent for cleaning the touch screen and worktable door
  • RNaseZap® (Ambion) — for complete removal of RNase contamination from glass and plastic surfaces
  • 0.1 M NaOH — for cleaning the worktable and racks to remove RNase contamination (alternative to RNaseZap)
  • Note: Alcohol is not recommended for cleaning of the door.


Lysetol® AF (Gigsept® Instru AF) (Schülke & Mayr GmbH) — disinfectant for submerging worktable items (consists of 14 g cocospropylene-diamine-guanidine diacetate, 35 g phenoxypropanols, and 2.5 g benzalkonium chloride per 100 g Lysetol AF, with anticorrosion components, fragrance, and 15–30% nonionic surfactants).



DECON-QUAT® 100 (Veltek Associates, Inc.) — quaternary ammonium salt based disinfectant concentrate for submerging worktable items (contains 5% alkyldimethylbenzylammonium chloride and 5% alkyldimethylethylbenzylammonium chloride).

Note: If you want to use disinfectants different from those recommended, ensure that their compositions are similar to those described above.

FAQ ID -1416
How can I get software updates for the QIAcube?

New software or software updates can be accessed via the QIAcube Web Portal at To access them directly, go to User Support.



FAQ ID -1413
Can purification columns from other suppliers be processed on the QIAcube?

No. The QIAcube is designed for fully automated processing of up to 12 samples using QIAGEN spin-column kits. Do not use spin columns manufactured by other suppliers with the QIAcube. Damage caused by use of other types of spin columns will void the instrument warranty.


See: for a demonstration on how the QIAcube is used with the RNeasy Mini Kit for automated purification of RNA.


FAQ ID -1406
Which QIAGEN DNA extraction kits are compatible with the PAXgene Saliva Collector?

Protocols for automated DNA extraction from saliva stabilized with the PAXgene Saliva Collector are available for the QIAsymphony DNA Midi Kit with the QIAsymphony SP instrument or the QIAamp DNA Mini Kit with the QIAcube (Classic and Connect). 
For manual extraction, supplementary protocols are available for the QIAamp DNA Mini and Gentra Puregene Cell Kits (see resources section).

Can I program my own protocols for the QIAcube?

No. Modified QIAGEN protocols or custom protocols developed to meet your specific requirements can be requested and purchased from QIAGEN.

1. Go to and enter the required information. If our Application Specialists require additional information, they will contact you directly.

2. You will be informed by e-mail when your customized protocol is ready for download.

3. Click the link in the e-mail to go to the download page.

FAQ ID -1405
Can the QIAcube be connected to a laboratory information management system?
No, it is not possible to connect the QIAcube with laboratory computer networks.
FAQ ID -1411
What dedicated QIAcube Kits are available?
What are the dimensions and weight of the QIAcube?

The QIAcube has the following weight and dimensions:  

  • Weight: 70.5 kg (155.4 lb.)
  • Width: 65 cm (25.6 in.)
  • Depth: 62 cm (24.4 in.)
  • Height (door closed): 57 cm (22.4 in.)
  • Height (door open): 81 cm (32 in.)
FAQ ID -1407
How can I decontaminate the QIAcube system?

Please refer to section 6.5 'Decontaminating the QIAcube' in chapter 6 'Maintenance Procedures' of the QIAcube User Manual.





FAQ ID -1419
Can the QIAcube rotor and/or buckets be removed for cleaning?

Yes, rotor and/or buckets can be removed from the QIAcube for cleaning. For information on how to remove these parts, refer to the QIAcube User Manual.


FAQ ID -1410
Can QIAcube protocol runs be interrupted, and subsequently be continued to completion?

You can stop a QIAcube protocol if there is an emergency by pressing “Cancel”. To confirm that you want to stop the protocol run, press “OK”. To cancel the 'stop protocol' command, press “Cancel”.

Note: If a protocol run is stopped, the run cannot be restarted. The samples must be processed manually. The last protocol step performed by the QIAcube will be displayed in the touch screen. For more information, refer to the QIAcube User Manual.

FAQ ID -1414
Do I need to buy special kits for the QIAcube?

The corresponding manual kits can be used for all available protocols on the QIAcube. The manual kits contain sufficient buffers and reagents to process the number of spin columns provided with the kit.

In addition to the purification kit, Rotor Adapters (10 x 24), cat. no 990394, and the required disposable tips:

  • Filter-Tips, 200 µl (1024), cat no. 990332,
  • Filter-Tips, 1000 µl (1024), cat no. 990352,
  • Filter-Tips, 1000 µl wide-bore (1024), cat no. 990452,

need to be ordered separately. To find out which filter-tips are required for a specific application, refer to the corresponding protocol sheet.

FAQ ID -1402
Can the QIAcube rotor adapters be autoclaved?
No. Autoclaving the rotor adapters will cause the plastic to deform and the rotor adapters will no longer fit properly into the centrifuge buckets.
FAQ ID -1409
Do I need to discard partially used QIAcube tip racks?

No. The QIAcube is equipped with an optical sensor, which determines the tip size and the number of tips loaded onto the worktable prior to starting a run.

The QIAcube can use partially used tip racks from previous runs, provided that the racks contain sufficient tips to process the number of samples loaded for the current run.

FAQ ID -1418